4PLP
Crystal Structure of the Homospermidine Synthase (HSS) from Blastochloris viridis in Complex with NAD
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 90 |
Detector technology | CCD |
Collection date | 2011-05-12 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 0.918 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 70.045, 109.792, 192.957 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 9.996 - 1.490 |
R-factor | 0.1924 |
Rwork | 0.191 |
R-free | 0.22540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ph5 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.413 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.20) |
Phasing software | MOLREP |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 96.478 | 47.713 | 1.380 |
High resolution limit [Å] | 1.314 | 4.150 | 1.310 |
Rmerge | 0.039 | 7.317 | |
Rmeas | 0.215 | 0.046 | 9.335 |
Rpim | 0.112 | 0.024 | 5.693 |
Total number of observations | 1068673 | 40233 | 54142 |
Number of reflections | 307932 | ||
<I/σ(I)> | 4.5 | 24 | 0.1 |
Completeness [%] | 87.5 | 98.6 | 45.8 |
Redundancy | 3.5 | 3.5 | 2.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 291 | Na-acetate, ammoniumacetate, PEG 3350, PEG400 as cryoprotectant |