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4PHX

Crystal structure of AggB, the minor subunit of aggregative adherence fimbriae type I from the Escherichia coli O4H104

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyPIXEL
Collection date2013-06-28
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.98
Spacegroup nameP 21 21 2
Unit cell lengths130.797, 163.968, 58.627
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution58.627 - 2.400
R-factor0.23
Rwork0.228
R-free0.27260
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2axw
RMSD bond length0.009
RMSD bond angle1.352
Data scaling softwareSCALA (3.3.20)
Phasing softwarePHASER
Refinement softwarePHENIX ((phenix.refine: 1.8.2_1309))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]102.25058.6272.530
High resolution limit [Å]2.4007.5902.400
Rmerge0.0410.565
Rmeas0.069
Rpim0.0300.0210.262
Total number of observations261640803739374
Number of reflections50214
<I/σ(I)>14.830.92.8
Completeness [%]99.999.299.9
Redundancy5.24.65.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.52900.2 M lithium sulfate monohydrate, 0.1 M Tris HCl, pH 8.5, 30% w/v PEG 4000

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PDB entries from 2024-08-28

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