4PDO
Structure of Ephrin type-A receptor 2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-11-23 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.000 |
Spacegroup name | P 32 |
Unit cell lengths | 92.461, 92.461, 75.836 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 14.902 - 2.104 |
R-factor | 0.1615 |
Rwork | 0.160 |
R-free | 0.18380 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1mqb |
RMSD bond length | 0.007 |
RMSD bond angle | 1.016 |
Data scaling software | SCALEPACK |
Refinement software | PHENIX (1.8.2_1309) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 15.000 | 15.000 | 2.140 |
High resolution limit [Å] | 2.100 | 5.600 | 2.100 |
Rmerge | 0.086 | 0.051 | 0.444 |
Total number of observations | 197356 | ||
Number of reflections | 41909 | ||
<I/σ(I)> | 9.3 | ||
Completeness [%] | 99.8 | 97.6 | 100 |
Redundancy | 4.7 | 4 | 5.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 0.8 M Na/K L(+)-tartrate, 0.1 M Tris-Cl pH 8.5, 1% (w/v) PEGMME 5000 |