4PDA
Structure of vcCNT-7C8C bound to cytidine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-04-09 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.0004 |
Spacegroup name | P 63 |
Unit cell lengths | 120.017, 120.017, 82.465 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.522 - 2.608 |
R-factor | 0.2154 |
Rwork | 0.214 |
R-free | 0.23930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3tij |
RMSD bond length | 0.002 |
RMSD bond angle | 0.609 |
Data scaling software | SCALEPACK |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.640 |
High resolution limit [Å] | 2.600 | 7.050 | 2.600 |
Rmerge | 0.094 | 0.062 | 0.665 |
Total number of observations | 130876 | ||
Number of reflections | 20609 | ||
<I/σ(I)> | 7.2 | ||
Completeness [%] | 99.3 | 99 | 98.7 |
Redundancy | 6.4 | 6.6 | 6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIQUID DIFFUSION | 8.5 | 290 | 37-42% PEG 400, 100 mM CaCl2 |