4PCL
X-ray crystal structure of an O-methyltransferase from Anaplasma phagocytophilum bound to SAM and a Manganese ion.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-03-12 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 123.870, 123.870, 121.310 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 37.838 - 1.850 |
R-factor | 0.1722 |
Rwork | 0.170 |
R-free | 0.20850 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.133 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.9pre_1665)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.900 | |
High resolution limit [Å] | 1.850 | 8.270 | 1.850 |
Rmerge | 0.064 | 0.024 | 0.536 |
Rmeas | 0.070 | 0.027 | 0.589 |
Total number of observations | 265323 | ||
Number of reflections | 46968 | 579 | 3382 |
<I/σ(I)> | 18.36 | 49.88 | 3.5 |
Completeness [%] | 99.3 | 90.6 | 98.9 |
Redundancy | 5.64 | 5.71 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 289 | 400 nl of protein solution plus 400 nl of precipitant solution. Precipitant was Wizard 3/4 well A5 - 0.2 M ammonium chloride, 20% PEG3350 |