4PAK
CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM VERMINEPHROBACTER EISENIAE EF01-2 (Veis_3954, TARGET EFI-510324) A NEPHRIDIAL SYMBIONT OF THE EARTHWORM EISENIA FOETIDA, BOUND TO (R)-PANTOIC ACID
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-04-04 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9793 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 78.023, 78.023, 110.477 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 24.895 - 1.200 |
R-factor | 0.1539 |
Rwork | 0.153 |
R-free | 0.16420 |
Structure solution method | SAD |
RMSD bond length | 0.009 |
RMSD bond angle | 1.241 |
Refinement software | PHENIX ((phenix.refine: 1.8.1_1168)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 110.480 | 110.480 | 1.220 |
High resolution limit [Å] | 1.200 | 6.570 | 1.200 |
Rmerge | 0.099 | 0.048 | 0.799 |
Rpim | 0.033 | 0.017 | 0.294 |
Total number of observations | 1204310 | 7576 | 49224 |
Number of reflections | 121721 | ||
<I/σ(I)> | 13.5 | 36.8 | 2.8 |
Completeness [%] | 100.0 | 98.3 | 100 |
Redundancy | 9.9 | 9 | 8.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 298 | Protein (67.0 mg/ml, 10 mM HEPES pH 7.5, 5 mM DTT, 10 mM (R)-Pantoic Acid); Reservoir ( 2.0 M Ammonium Sulfate, 0.1 M Bis-Tris pH 5.5); Cryoprotection (20% Reservoir + 80% 2.0M LiSO4) |