4PAF
CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RUEGERIA POMEROYI DSS-3 (SPO1773, TARGET EFI-510260) WITH BOUND 3,4-DIHYDROXYBENZOATE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-04-04 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 62.589, 62.983, 75.706 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.238 - 1.600 |
R-factor | 0.1445 |
Rwork | 0.143 |
R-free | 0.16730 |
Structure solution method | SAD |
RMSD bond length | 0.012 |
RMSD bond angle | 1.358 |
Refinement software | PHENIX ((phenix.refine: 1.8.1_1168)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 62.980 | 62.980 | 1.630 |
High resolution limit [Å] | 1.600 | 8.760 | 1.600 |
Rmerge | 0.137 | 0.077 | 0.705 |
Rpim | 0.056 | 0.036 | 0.283 |
Total number of observations | 269298 | 1235 | 13746 |
Number of reflections | 38418 | ||
<I/σ(I)> | 11.2 | 22.9 | 3 |
Completeness [%] | 95.6 | 87.1 | 99.8 |
Redundancy | 7 | 4.8 | 7.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | Protein (67.94 mg/ml, 10 mM HEPES pH 7.5, 5 mM DTT, 10 mM 3,4-DIHYDROXYBENZOATE); Reservoir (0.1 M Bis-Tris Propane pH 7, 60 %(v/v) tacsimate); Cryoprotection (80% Reservoir + 20% Diethylene Glycol) |