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4P2H

Structure of human DNA polymerase complexed with N7MG in the template opposite to incoming non-hydrolyzable TTP with manganese in the active site

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.3
Synchrotron siteALS
Beamline5.0.3
Temperature [K]100
Detector technologyCCD
Collection date2013-12-15
DetectorADSC QUANTUM 315r
Wavelength(s)0.97648
Spacegroup nameP 1 21 1
Unit cell lengths54.767, 79.167, 54.982
Unit cell angles90.00, 106.18, 90.00
Refinement procedure
Resolution19.792 - 1.987
R-factor0.2063
Rwork0.204
R-free0.24950
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1bxp
RMSD bond length0.005
RMSD bond angle1.219
Data scaling softwareSCALEPACK
Refinement softwarePHENIX ((phenix.refine: 1.8.4_1496))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]20.00020.0002.020
High resolution limit [Å]1.9905.3701.990
Rmerge0.0860.0470.445
Total number of observations174392
Number of reflections30969
<I/σ(I)>7.8
Completeness [%]100.0100100
Redundancy5.65.65.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.529814%-23% PEG3400, 350 mM sodium acetate, 50 mM imidazole

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PDB entries from 2024-08-07

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