4P2H
Structure of human DNA polymerase complexed with N7MG in the template opposite to incoming non-hydrolyzable TTP with manganese in the active site
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.3 |
Synchrotron site | ALS |
Beamline | 5.0.3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-12-15 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97648 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 54.767, 79.167, 54.982 |
Unit cell angles | 90.00, 106.18, 90.00 |
Refinement procedure
Resolution | 19.792 - 1.987 |
R-factor | 0.2063 |
Rwork | 0.204 |
R-free | 0.24950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1bxp |
RMSD bond length | 0.005 |
RMSD bond angle | 1.219 |
Data scaling software | SCALEPACK |
Refinement software | PHENIX ((phenix.refine: 1.8.4_1496)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 20.000 | 2.020 |
High resolution limit [Å] | 1.990 | 5.370 | 1.990 |
Rmerge | 0.086 | 0.047 | 0.445 |
Total number of observations | 174392 | ||
Number of reflections | 30969 | ||
<I/σ(I)> | 7.8 | ||
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 5.6 | 5.6 | 5.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | 14%-23% PEG3400, 350 mM sodium acetate, 50 mM imidazole |