4O8H
0.85A resolution structure of PEG 400 Bound Cyclophilin D
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-01-01 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 57.020, 57.020, 87.159 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.510 - 0.850 |
R-factor | 0.1077 |
Rwork | 0.107 |
R-free | 0.11880 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2bit |
RMSD bond length | 0.015 |
RMSD bond angle | 1.482 |
Data scaling software | Aimless (0.1.29) |
Phasing software | PHASER (2.5.2) |
Refinement software | PHENIX (1.8.4_1488) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.720 | 47.720 | 0.860 |
High resolution limit [Å] | 0.850 | 4.660 | 0.850 |
Rmerge | 0.049 | 0.043 | 0.342 |
Total number of observations | 20505 | 6134 | |
Number of reflections | 123449 | ||
<I/σ(I)> | 30.7 | 83.7 | 1.8 |
Completeness [%] | 97.7 | 100 | 60.2 |
Redundancy | 14.2 | 22 | 1.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 293 | 25% (w/v) PEG 4000, 100 mM Hepes, 200 NaCl, pH 7.5, vapor diffusion, temperature 293K |