Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4NYD

Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.2
Synchrotron siteALS
Beamline5.0.2
Temperature [K]100
Detector technologyCCD
Collection date2011-11-21
DetectorADSC QUANTUM 315r
Wavelength(s)1.000
Spacegroup nameP 32 1 2
Unit cell lengths65.436, 65.436, 101.110
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution50.000 - 2.900
Rwork0.200
R-free0.25730
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2hoj
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwareCNS
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.950
High resolution limit [Å]2.9007.8602.900
Rmerge0.0770.0530.576
Number of reflections5634
<I/σ(I)>15.5
Completeness [%]99.496.899.3
Redundancy2.92.72.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP729430% PEG2000, 0.5 M ammonium chloride, 50 mM succinate/KOH, pH 7.0, 10 mM manganese chloride, VAPOR DIFFUSION, HANGING DROP, temperature 294K

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon