4NX8
Structure of a PTP-like phytase from Bdellovibrio bacteriovorus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-09-10 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97949 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 53.640, 78.560, 69.820 |
Unit cell angles | 90.00, 93.13, 90.00 |
Refinement procedure
Resolution | 34.222 - 1.698 |
R-factor | 0.1581 |
Rwork | 0.156 |
R-free | 0.19280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2psz |
RMSD bond length | 0.017 |
RMSD bond angle | 1.648 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.15) |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 34.222 | 34.222 | 1.790 |
High resolution limit [Å] | 1.698 | 5.370 | 1.698 |
Rmerge | 0.054 | 0.433 | |
Total number of observations | 6882 | 27255 | |
Number of reflections | 63333 | ||
<I/σ(I)> | 7.2 | 9.6 | 1.4 |
Completeness [%] | 99.2 | 98.8 | 94.7 |
Redundancy | 3.4 | 3.4 | 3.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 200 mM MgCl2, 100 mM Tris-HCl (7.0), 8-10% PEG 8000, VAPOR DIFFUSION, SITTING DROP, temperature 293K |