4NMD
Crystal structure of proline utilization A (PutA) from Geobacter sulfurreducens PCA reduced with dithionite
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-03-10 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979100 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 95.173, 151.359, 175.477 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.094 - 1.979 |
R-factor | 0.1669 |
Rwork | 0.165 |
R-free | 0.19880 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4nmc |
RMSD bond length | 0.007 |
RMSD bond angle | 1.034 |
Data reduction software | XDS |
Data scaling software | SCALEPACK |
Refinement software | PHENIX (1.8_1069) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.094 | 49.094 | 2.090 |
High resolution limit [Å] | 1.979 | 6.260 | 1.980 |
Rmerge | 0.017 | 0.605 | |
Rmeas | 0.086 | 0.022 | 0.748 |
Rpim | 0.042 | 0.011 | 0.369 |
Total number of observations | 651971 | 20370 | 94509 |
Number of reflections | 172814 | ||
<I/σ(I)> | 14.6 | 50.8 | 2.4 |
Completeness [%] | 98.2 | 94.1 | 98.4 |
Redundancy | 3.8 | 3.7 | 3.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.8 | 298 | 23% PEG400, 0.1 M MES, pH 5.8, N-terminal His Tag cleaved with TEV protease prior to crystallization, VAPOR DIFFUSION, SITTING DROP, temperature 298K |