4NKP
Crystal structure of a putative extracellular heme-binding protein (DESPIG_02683) from Desulfovibrio piger ATCC 29098 at 1.24 A resolution
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL11-1 |
Synchrotron site | SSRL |
Beamline | BL11-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-05-01 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91837,0.97879,0.97812 |
Spacegroup name | P 4 |
Unit cell lengths | 80.964, 80.964, 72.927 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.625 - 1.240 |
R-factor | 0.1291 |
Rwork | 0.128 |
R-free | 0.14940 |
Structure solution method | MAD |
RMSD bond length | 0.009 |
RMSD bond angle | 1.230 |
Data reduction software | XDS |
Data scaling software | XSCALE (July 4, 2012) |
Phasing software | SOLVE |
Refinement software | REFMAC (5.5.0110) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.625 | 1.280 | |
High resolution limit [Å] | 1.240 | 2.670 | 1.240 |
Rmerge | 0.033 | 0.014 | 0.539 |
Number of reflections | 131689 | 24864 | 22097 |
<I/σ(I)> | 14.7 | 50.6 | 1.7 |
Completeness [%] | 96.3 | 94.4 | 92.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9 | 277 | 2.4M ammonium sulfate, 0.1M Bicine pH 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K |