4NHX

Crystal structure of human OGFOD1, 2-oxoglutarate and iron-dependent oxygenase domain containing 1, in complex with N-oxalylglycine (NOG)

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	DIAMOND BEAMLINE I04
Synchrotron site	Diamond
Beamline	I04
Temperature [K]	100
Detector technology	PIXEL
Collection date	2013-09-26
Detector	DECTRIS PILATUS 6M
Wavelength(s)	0.83440
Spacegroup name	P 32 2 1
Unit cell lengths	64.401, 64.401, 232.041
Unit cell angles	90.00, 90.00, 120.00

Refinement procedure

Resolution	45.239 - 2.105
R-factor	0.1904
Rwork	0.189
R-free	0.21540
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	3kt7
RMSD bond length	0.006
RMSD bond angle	1.000
Data reduction software	DENZO
Data scaling software	SCALEPACK
Phasing software	PHASER
Refinement software	PHENIX (1.8.2_1309)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	50.000	50.000	2.180
High resolution limit [Å]	2.100	4.520	2.100
Rmerge	0.153	0.120	0.648
Number of reflections	33097
<I/σ(I)>	6.1	19.8	2.5
Completeness [%]	99.1	100	91.7
Redundancy	16.2	17.9	6.1

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	6.5	293	0.7 mM MnCl2, 1.0 mM OGA, 25% (w/v) PEG 1500, 100 mM MIB buffer and 100 mM glycine, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K