Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4NG7

Crystal structure of a TRAP periplasmic solute binding protein from Citrobacter koseri (CKO_04899), Target EFI-510094, apo, open structure

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 31-ID
Synchrotron siteAPS
Beamline31-ID
Temperature [K]100
Detector technologyCCD
Collection date2013-08-12
DetectorRAYONIX MX225HE
Wavelength(s)0.9793
Spacegroup nameP 65 2 2
Unit cell lengths93.503, 93.503, 140.175
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution40.488 - 2.300
R-factor0.2087
Rwork0.206
R-free0.25450
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4n8y
RMSD bond length0.008
RMSD bond angle1.129
Data reduction softwareMOSFLM
Data scaling softwareSCALA (3.3.20)
Phasing softwarePHENIX
Refinement softwarePHENIX (1.8.1_1168)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]80.97640.4882.420
High resolution limit [Å]2.3007.2702.300
Rmerge0.1400.0590.948
Total number of observations700834063
Number of reflections16734
<I/σ(I)>13.99.30.8
Completeness [%]99.997.899.9
Redundancy1411.514.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP729837.4 mg/mL protein in 10 mM HEPES, pH 7.5, 5 mM DTT, 1 mM D-arabinoate, reservoir: 0.1 M Bis-Tris propane, pH 7, 60% v/v tacsimate, cryoprotection: 4:1 reservoir:glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 298K

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon