Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4ND7

Crystal structure of apo 3-nitro-tyrosine tRNA synthetase (5B) in the closed form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 4.2.2
Synchrotron siteALS
Beamline4.2.2
Temperature [K]77
Detector technologyCCD
Collection date2012-04-01
DetectorNOIR-1
Wavelength(s)0.97
Spacegroup nameP 43 21 2
Unit cell lengths101.770, 101.770, 72.280
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.997 - 2.000
R-factor0.2261
Rwork0.223
R-free0.27770
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle1.050
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwareREFMAC
Refinement softwarePHENIX ((phenix.refine: 1.8_1069))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]51.0002.100
High resolution limit [Å]2.0002.000
Number of reflections26163
Completeness [%]100.0100
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.129322-23% PEG 300, 5% PEG 8000, 10% glycerol and 100 mM Tris pH 8.0 to 8.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K

227344

PDB entries from 2024-11-13

PDB statisticsPDBj update infoContact PDBjnumon