4N3V
Crystal structure of a bile-acid 7-alpha dehydratase (CLOHIR_00079) from Clostridium hiranonis DSM 13275 at 1.89 A resolution with product added
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-09-19 |
Detector | ADSC QUANTUM 315 |
Spacegroup name | H 3 2 |
Unit cell lengths | 84.282, 84.282, 311.823 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.414 - 1.890 |
R-factor | 0.1894 |
Rwork | 0.188 |
R-free | 0.21830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4l8p |
RMSD bond length | 0.010 |
RMSD bond angle | 1.375 |
Data reduction software | XDS |
Data scaling software | XSCALE (July 4, 2012) |
Phasing software | PHASER (2.3.0) |
Refinement software | REFMAC (5.7.0032) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.414 | 47.410 | 1.940 |
High resolution limit [Å] | 1.890 | 8.450 | 1.890 |
Rmerge | 0.069 | 0.025 | 0.885 |
Rmeas | 0.073 | 0.026 | 0.953 |
Rpim | 0.008 | 0.350 | |
Total number of observations | 362385 | ||
Number of reflections | 34715 | 450 | 2486 |
<I/σ(I)> | 19.5 | 51.7 | 2.5 |
Completeness [%] | 99.9 | 99.3 | 98.8 |
Redundancy | 9.3 | 7.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 293 | 10.00% polyethylene glycol 6000, 0.1M citric acid pH 5.0, Additive: 0.001 M 3-oxo-delta 4,6, Lithocholyl Coenzyme A, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 293K |