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4MX6

Crystal structure of a trap periplasmic solute binding protein from shewanella oneidensis (SO_3134), target EFI-510275, with bound succinate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 31-ID
Synchrotron siteAPS
Beamline31-ID
Temperature [K]100
Detector technologyCCD
Collection date2013-08-14
DetectorRAYONIX MX-225
Wavelength(s)0.9793
Spacegroup nameP 1 21 1
Unit cell lengths38.066, 68.581, 53.937
Unit cell angles90.00, 99.66, 90.00
Refinement procedure
Resolution26.587 - 1.100
R-factor0.1343
Rwork0.133
R-free0.15270
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle1.184
Data reduction softwareMOSFLM
Data scaling softwareSCALA (3.3.20)
Phasing softwareAMoRE
Refinement softwarePHENIX (1.8.1_1168)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]68.58168.5811.160
High resolution limit [Å]1.1003.4801.100
Rmerge0.0560.0210.583
Total number of observations1112746390
Number of reflections109476
<I/σ(I)>11.1151.4
Completeness [%]99.191.297.5
Redundancy3.53.43
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5Protein (47.1 mg/ml, 10 mM Hepes, 10 mM Succinc Acid), Reservoir (40 % v/v pentaerythritol propoxylate (5/4 PO/OH), 15 % v/v ethanol (MIDAS C6)), Cryoprotection (Straight), pH 7.5, VAPOR DIFFUSION, HANGING DROP

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PDB entries from 2025-06-18

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