4M6I
Structure of the reduced, Zn-bound form of Mycobacterium tuberculosis peptidoglycan amidase Rv3717
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-11-20 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.283055 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 125.427, 45.935, 68.050 |
Unit cell angles | 90.00, 116.30, 90.00 |
Refinement procedure
Resolution | 42.524 - 2.666 |
R-factor | 0.1997 |
Rwork | 0.197 |
R-free | 0.22320 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ne8 |
RMSD bond length | 0.005 |
RMSD bond angle | 1.102 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.720 |
High resolution limit [Å] | 2.666 | 7.240 | 2.666 |
Rmerge | 0.144 | 0.065 | 0.777 |
Number of reflections | 10030 | ||
<I/σ(I)> | 6.2 | ||
Completeness [%] | 98.2 | 100 | 71.5 |
Redundancy | 7.5 | 7.5 | 5.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 291 | 200 mM sodium chloride, 100 mM TRIS, 25% PEG3350, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K |