4M6H
Structure of the reduced, metal-free form of Mycobacterium tuberculosis peptidoglycan amidase Rv3717
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-11-11 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.1159 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 125.358, 45.677, 67.789 |
Unit cell angles | 90.00, 116.02, 90.00 |
Refinement procedure
Resolution | 42.330 - 2.194 |
R-factor | 0.2075 |
Rwork | 0.205 |
R-free | 0.23280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ne8 |
RMSD bond length | 0.005 |
RMSD bond angle | 1.186 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.330 | 42.330 | 2.240 |
High resolution limit [Å] | 2.194 | 5.970 | 2.194 |
Rmerge | 0.091 | 0.026 | 0.519 |
Number of reflections | 17421 | ||
<I/σ(I)> | 7.5 | ||
Completeness [%] | 97.3 | 99.2 | 96.2 |
Redundancy | 2.3 | 2.2 | 2.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 291 | 200 mM sodium chloride, 100 mM TRIS, 25% PEG3350, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K |