4M5Z
Crystal structure of broadly neutralizing antibody 5J8 bound to 2009 pandemic influenza hemagglutinin, HA1 subunit
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 77 |
Detector technology | CCD |
Collection date | 2012-09-11 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97949 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 67.549, 67.549, 259.640 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.466 - 2.250 |
R-factor | 0.193 |
Rwork | 0.191 |
R-free | 0.23820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4M5Y CHAINS H AND L |
RMSD bond length | 0.010 |
RMSD bond angle | 1.549 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.8.1_1168)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.320 |
High resolution limit [Å] | 2.250 | 2.250 |
Rmerge | 0.060 | 0.755 |
Number of reflections | 33082 | |
<I/σ(I)> | 14.9 | 1.9 |
Completeness [%] | 97.7 | 83.1 |
Redundancy | 6.6 | 4.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 296 | 0.1 M Tris, pH 8.5, 23% PEG8000, 0.2 M magnesium chloride, VAPOR DIFFUSION, SITTING DROP, temperature 296K |