4M17
Crystal Structure of Surfactant Protein-D D325A/R343V mutant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU300 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2012-05-07 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 107.524, 160.108, 160.073 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 14.938 - 2.096 |
R-factor | 0.1701 |
Rwork | 0.163 |
R-free | 0.18780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3g84 |
RMSD bond length | 0.011 |
RMSD bond angle | 0.572 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.8_1063) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 15.000 | 15.000 | 2.170 |
High resolution limit [Å] | 2.096 | 4.490 | 2.096 |
Rmerge | 0.073 | 0.051 | 0.324 |
Number of reflections | 154671 | ||
<I/σ(I)> | 21.5 | ||
Completeness [%] | 95.8 | 99 | 78.3 |
Redundancy | 5.8 | 6 | 4.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 290 | Purified D325A+R343V (12-15 mg/mL in 20 mM HEPES, pH 7.5, 150 mM sodium chloride, 10 mM calcium acetate) + reservoir solution (0.1 M HEPES, pH 7.5, 0.25 M sodium chloride, 20-22% w/v PEG3350), VAPOR DIFFUSION, HANGING DROP, temperature 290K |