4LVB
Fragment-based Identification of Amides Derived From trans-2-(Pyridin-3-yl)cyclopropanecarboxylic Acid as Potent Inhibitors of Human Nicotinamide Phosphoribosyltransferase (NAMPT)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL11-1 |
Synchrotron site | SSRL |
Beamline | BL11-1 |
Temperature [K] | 93 |
Detector technology | PIXEL |
Collection date | 2012-04-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979450 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 60.612, 106.681, 83.142 |
Unit cell angles | 90.00, 96.39, 90.00 |
Refinement procedure
Resolution | 82.630 - 1.836 |
R-factor | 0.1772 |
Rwork | 0.175 |
R-free | 0.21540 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.039 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.7.3_928)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 82.630 | 1.846 |
High resolution limit [Å] | 1.836 | 1.836 |
Number of reflections | 90042 | |
Completeness [%] | 98.3 | 98.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.6 | 292 | 0.2uL + 0.2uL drops containing 6mg/mL Nampt, 0.1M Sodium phosphate, 25-29% polyethylene glycol 3350, 0.2M NaCl, pH 8.6, VAPOR DIFFUSION, HANGING DROP, temperature 292K |