Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4LRE

Phosphopentomutase soaked with 2,3-dideoxyribose 5-phosphate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-G
Synchrotron siteAPS
Beamline21-ID-G
Temperature [K]100
Detector technologyCCD
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)0.979
Spacegroup nameP 1 21 1
Unit cell lengths91.504, 76.520, 107.286
Unit cell angles90.00, 108.76, 90.00
Refinement procedure
Resolution20.000 - 2.100
R-factor0.19557
Rwork0.193
R-free0.23905
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3m8w
RMSD bond length0.009
RMSD bond angle1.239
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareREFMAC (5.5.0109)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.180
High resolution limit [Å]2.1002.100
Number of reflections79568
<I/σ(I)>18.23.2
Completeness [%]96.788.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.529313% PEG3350, 50 mM manganese chloride, 75 mM ammonium acetate, 100 mM Bis-Tris, crystals soaked in reservoir solution + 10 mM dideoxyribose 5-phosphate for 30 minutes, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon