4LP4
Crystal structure of the human RAGE VC1 fragment in space group P62
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX II BEAMLINE I911-2 |
Synchrotron site | MAX II |
Beamline | I911-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-02-18 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 1.04 |
Spacegroup name | P 62 |
Unit cell lengths | 102.000, 102.000, 103.400 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 33.387 - 2.400 |
R-factor | 0.1805 |
Rwork | 0.178 |
R-free | 0.21750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3o3u |
RMSD bond length | 0.006 |
RMSD bond angle | 0.974 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 35.000 | 2.500 | |
High resolution limit [Å] | 2.400 | 20.000 | 2.400 |
Rmerge | 0.075 | 0.025 | 0.494 |
Number of reflections | 23876 | 33 | 2763 |
<I/σ(I)> | 22.72 | 40.57 | 4.77 |
Completeness [%] | 99.7 | 71.7 | 100 |
Redundancy | 9.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 277 | 2.5 M sodium acetate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K |