4KMO
Crystal Structure of the Vps33-Vps16 HOPS subcomplex from Chaetomium thermophilum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X29A |
Synchrotron site | NSLS |
Beamline | X29A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-11-06 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9793 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 100.274, 100.274, 176.225 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.656 - 2.600 |
R-factor | 0.2267 |
Rwork | 0.225 |
R-free | 0.25370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4jc8 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.634 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.640 |
High resolution limit [Å] | 2.600 | 7.050 | 2.600 |
Rmerge | 0.111 | 0.079 | 0.873 |
Number of reflections | 31686 | ||
<I/σ(I)> | 6.4 | ||
Completeness [%] | 98.1 | 96.5 | 94 |
Redundancy | 9.3 | 9.1 | 9.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 298 | 12-16% (w/v) PEG 4000, 150 mM ammonium sulfate, 100 mM MES buffer , pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K |