4KA7
Structure of Organellar OligoPeptidase (E572Q) in complex with an endogenous substrate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX II BEAMLINE I911-3 |
Synchrotron site | MAX II |
Beamline | I911-3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-02-25 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.281 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 71.466, 100.771, 132.484 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.650 - 1.800 |
R-factor | 0.1799 |
Rwork | 0.179 |
R-free | 0.19890 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.103 |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHASER |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 80.206 | 29.630 | 1.890 |
High resolution limit [Å] | 1.797 | 5.680 | 1.800 |
Rmerge | 0.024 | 0.444 | |
Rmeas | 0.031 | 0.518 | |
Rpim | 0.011 | 0.193 | |
Total number of observations | 21131 | 89498 | |
Number of reflections | 89490 | ||
<I/σ(I)> | 20.8 | 48.4 | 3.9 |
Completeness [%] | 99.7 | 99 | 98.4 |
Redundancy | 7.3 | 6.9 | 7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 20% PEG 5000 MME, 0.1M Bis-Tris-Propane, 0.2M Na-malonate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K |