Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4JYY

Crystal structure of the azide and iron substituted Clostrium difficile SOD2 complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17U
Synchrotron siteSSRF
BeamlineBL17U
Temperature [K]100
Detector technologyCCD
Collection date2012-01-03
DetectorADSC QUANTUM 315
Wavelength(s)0.9795
Spacegroup nameP 65 2 2
Unit cell lengths80.375, 80.375, 250.532
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution40.187 - 2.101
R-factor0.1831
Rwork0.182
R-free0.19770
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3tjt
RMSD bond length0.007
RMSD bond angle0.976
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASES
Refinement softwarePHENIX ((phenix.refine: 1.5_2))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.2002.140
High resolution limit [Å]2.1002.100
Rmerge0.0830.703
Number of reflections28940
<I/σ(I)>69.69
Completeness [%]99.9100
Redundancy41.943.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP728960% (v/v) tacsimateTM, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 289K

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon