Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4JFD

Preservation of peptide specificity during TCR-MHC contact dominated affinity enhancement of a melanoma-specific TCR

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyCCD
Collection date2010-10-08
Wavelength(s)0.9763
Spacegroup nameP 43
Unit cell lengths121.490, 121.490, 82.960
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution54.330 - 2.460
R-factor0.2045
Rwork0.202
R-free0.24830
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.021
RMSD bond angle1.174
Data reduction softwarexia2
Data scaling softwareSCALA (3.3.15)
Phasing softwarePHASER (2.1.4)
Refinement softwareREFMAC
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]54.33254.3322.520
High resolution limit [Å]2.46010.9902.460
Rmerge0.0730.0330.750
Total number of observations362927489
Number of reflections44185
<I/σ(I)>17.118.21
Completeness [%]100.097.8100
Redundancy8.26.98.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.52910.1 M TRIS, 15% PEG 4000, 17.4% glycerol, pH 7.5, vapor diffusion, sitting drop, temperature 291K

237423

PDB entries from 2025-06-11

PDB statisticsPDBj update infoContact PDBjnumon