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4JD7

Crystal structure of pput_1285, a putative hydroxyproline epimerase from Pseudomonas putida f1 (target EFI-506500), open form, space group P212121, bound sulfate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 31-ID
Synchrotron siteAPS
Beamline31-ID
Temperature [K]100
Detector technologyCCD
Collection date2013-02-14
DetectorRAYONIX MX225HE
Wavelength(s)0.9793
Spacegroup nameP 21 21 21
Unit cell lengths64.844, 96.804, 109.214
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution72.443 - 1.500
R-factor0.1603
Rwork0.159
R-free0.17550
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2azp
RMSD bond length0.009
RMSD bond angle1.325
Data reduction softwareMOSFLM
Data scaling softwareSCALA (3.3.20)
Phasing softwareAMoRE
Refinement softwarePHENIX (1.8.1_1168)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]72.443109.2141.580
High resolution limit [Å]1.5004.7401.500
Rmerge0.0670.0260.707
Total number of observations25457111979
Number of reflections109888
<I/σ(I)>18201.1
Completeness [%]99.598.798.9
Redundancy7.36.87.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP298Protein (15 mM Hepes pH 8.0, 150 mM NaCl, 5% glycerol, 10 mM PYRROLE-2-CARBOXYLATE); Reservoir (0.1 M NaAcetate pH 4.6, 1.5 M LiSO4); Soak 2 minutes in (2.0 M LiSO4 with 20% reservoir), VAPOR DIFFUSION, SITTING DROP, temperature 298K

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PDB entries from 2025-06-18

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