4IKJ
Crystal structure of wild-type human transthyretin in complex with sulindac
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE D03B-MX1 |
Synchrotron site | LNLS |
Beamline | D03B-MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-09-16 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 1.4250 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 42.420, 83.490, 63.870 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.840 - 2.100 |
R-factor | 0.2014 |
Rwork | 0.198 |
R-free | 0.25720 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.501 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.2.25) |
Phasing software | MOLREP |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 63.888 | 19.842 | 2.210 |
High resolution limit [Å] | 2.100 | 6.640 | 2.100 |
Rmerge | 0.077 | 0.038 | 0.231 |
Rmeas | 0.048 | 0.280 | |
Rpim | 0.028 | 0.156 | |
Total number of observations | 1347 | 5813 | |
Number of reflections | 13202 | ||
<I/σ(I)> | 12 | 22.2 | 4.4 |
Completeness [%] | 95.9 | 94.5 | 99.8 |
Redundancy | 3 | 2.9 | 2.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | 10mg/mL wtTTR, 0.2M Calcium chloride, 0.1M HEPES sodium pH 7.5, 28% v/v Polyethylene glycol 400 (Hampton Research's Crystal Screen I, #14), VAPOR DIFFUSION, HANGING DROP, temperature 291K |