4ID9
Crystal structure of a short-chain dehydrogenase/reductase superfamily protein from agrobacterium tumefaciens (TARGET EFI-506441) with bound nad, monoclinic form 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-12-08 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9793 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 52.356, 74.426, 95.341 |
Unit cell angles | 90.00, 97.10, 90.00 |
Refinement procedure
Resolution | 29.248 - 1.600 |
R-factor | 0.1825 |
Rwork | 0.181 |
R-free | 0.21280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3enk |
RMSD bond length | 0.006 |
RMSD bond angle | 1.078 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (0.1.27) |
Phasing software | BALBES |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 94.610 | 1.630 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.050 | 0.477 |
Number of reflections | 94951 | |
<I/σ(I)> | 12.8 | 2.3 |
Completeness [%] | 99.1 | 98.8 |
Redundancy | 3.5 | 3.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | sitting drop vapor diffusion | 6.5 | 298 | Protein (10mM Tris pH 7.9, 5 mM NAD, 5 mM UDP-GAL; Reservoir (0.2 M Ammonium Acetate, 0.1 M Bis-Tris:HCl pH 6.5, 25% (w/v) PEG 3350); Cryoprotection (0.40 mM Ammonium Acetate, 0.20 mM Bis-Tris:HCl pH 6.5, 40% (w/v) PEG 3350, 5 mM NAD, 5 mM UDP-GAL), sitting drop vapor diffusion, temperature 298K |