4I1I
Crystal structure of a putative Cytosolic malate dehydrogenase from Leishmania major Friedlin in complex with NAD
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-11-08 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.97872 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 64.820, 65.130, 77.490 |
Unit cell angles | 90.00, 110.67, 90.00 |
Refinement procedure
Resolution | 48.500 - 1.500 |
R-factor | 0.1459 |
Rwork | 0.145 |
R-free | 0.16550 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4h7p |
RMSD bond length | 0.015 |
RMSD bond angle | 1.664 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC (5.7.0032) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.540 | |
High resolution limit [Å] | 1.500 | 6.710 | 1.500 |
Rmerge | 0.059 | 0.044 | 0.350 |
Number of reflections | 95941 | 1131 | 6711 |
<I/σ(I)> | 12.27 | 24.22 | 2.78 |
Completeness [%] | 99.2 | 98.1 | 94.2 |
Redundancy | 3.7 | 2.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 290 | EmeraldBio PACT screen a3: 25% PEG 1500, 100mM SPG buffer pH 6.0; LemaA.01212.a.A1.P001468 at 15mg/ml + 2.5mM NAD, VAPOR DIFFUSION, SITTING DROP, temperature 290K |