4HZA
Crystal Structure of the Immunoglobulin variable domain of Nectin-2 in monoclinic form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X29A |
Synchrotron site | NSLS |
Beamline | X29A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-06-08 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9793 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 51.907, 49.261, 51.867 |
Unit cell angles | 90.00, 116.98, 90.00 |
Refinement procedure
Resolution | 40.000 - 1.700 |
R-factor | 0.1884 |
Rwork | 0.186 |
R-free | 0.22590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ron |
RMSD bond length | 0.024 |
RMSD bond angle | 2.087 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 1.730 |
High resolution limit [Å] | 1.700 | 4.610 | 1.700 |
Rmerge | 0.060 | 0.030 | 0.525 |
Number of reflections | 25886 | ||
<I/σ(I)> | 22 | ||
Completeness [%] | 100.0 | 99.6 | 100 |
Redundancy | 4.3 | 4.2 | 4.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 298 | 0.2M NaCl, 0.1M BIS-TRIS pH 5.5, 25% PEG 4K, Vapor diffusion, Sitting drop, temperature 298K |