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4GXH

Crystal Structure of a Pyrrolidone-carboxylate peptidase 1 (target ID NYSGRC-012831) from Xenorhabdus bovienii SS-2004

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X29A
Synchrotron siteNSLS
BeamlineX29A
Temperature [K]77
Detector technologyCCD
Collection date2012-04-27
DetectorADSC QUANTUM 315
Wavelength(s)1.075
Spacegroup nameP 43 2 2
Unit cell lengths117.179, 117.179, 186.615
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.691 - 2.700
R-factor0.1782
Rwork0.176
R-free0.21900
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)A low resolution de-novo phased structure
RMSD bond length0.010
RMSD bond angle1.383
Data reduction softwareHKL-3000
Data scaling softwareSCALEPACK
Phasing softwareMOLREP
Refinement softwarePHENIX (1.8_1069)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.750
High resolution limit [Å]2.7007.3202.700
Rmerge0.0910.0370.890
Number of reflections40725
<I/σ(I)>14.5
Completeness [%]99.999.1100
Redundancy5.35.45.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.22930.2 M Na2HPO4/KH2PO4, 2.5 M Sodium Chloride, pH 6.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K

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