4GKY
Crystal structure of a carbohydrate-binding domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 93 |
Detector technology | CCD |
Collection date | 2011-11-12 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9792 |
Spacegroup name | P 6 |
Unit cell lengths | 110.263, 110.263, 38.332 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 38.332 - 2.420 |
R-factor | 0.1943 |
Rwork | 0.192 |
R-free | 0.21230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3a4u |
RMSD bond length | 0.008 |
RMSD bond angle | 0.979 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHENIX (1.8_1069) |
Refinement software | PHENIX ((phenix.refine: 1.8_1069)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.750 | 2.550 |
High resolution limit [Å] | 2.420 | 2.420 |
Rmerge | 0.437 | |
Number of reflections | 10429 | |
<I/σ(I)> | 7.7 | |
Completeness [%] | 100.0 | 100 |
Redundancy | 10.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 293 | 17% PEG 8000, 0.002M calcium chloride, 0.01M alpha-1,2-dimannose, 0.05M sodium cacodylate, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K |