4FWO
Crystal structure of Salmonella typhimurium propionate kinase (TdcD) in complex with GMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2008-04-04 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.5418 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 110.921, 110.921, 66.789 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 50.000 - 2.900 |
R-factor | 0.2308 |
Rwork | 0.228 |
R-free | 0.28710 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2e1y |
RMSD bond length | 0.006 |
RMSD bond angle | 0.955 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.5.0072) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.000 |
High resolution limit [Å] | 2.900 | 6.240 | 2.900 |
Rmerge | 0.142 | 0.107 | 0.307 |
Number of reflections | 10515 | ||
<I/σ(I)> | 62.6 | ||
Completeness [%] | 97.6 | 99.4 | 96.7 |
Redundancy | 4.6 | 7.4 | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 298 | 0.1 M Bis-Tris pH 6.0, 35% Pentaerythritol ethoxylate, VAPOR DIFFUSION, HANGING DROP, temperature 298K |