4FT8
E. coli Catabolite Activator Protein with Cobalt and Sulfate Ligands
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X8C |
Synchrotron site | NSLS |
Beamline | X8C |
Temperature [K] | 108 |
Detector technology | CCD |
Collection date | 2007-11-16 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 1.07 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 104.143, 108.452, 44.320 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.781 - 1.966 |
R-factor | 0.1977 |
Rwork | 0.196 |
R-free | 0.23000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | search 1: 1ZRC CAP N-terminal domain dimer; searches 2 3: 1ZRC CAP individual C-terminal domain |
RMSD bond length | 0.005 |
RMSD bond angle | 1.000 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.030 |
High resolution limit [Å] | 1.960 | 4.220 | 1.960 |
Rmerge | 0.088 | 0.041 | 0.778 |
Number of reflections | 35645 | ||
<I/σ(I)> | 9.5 | ||
Completeness [%] | 97.1 | 98.5 | 90.5 |
Redundancy | 5.1 | 4.9 | 4.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | A CAP-DNA complex was screened by hanging-drop vapor diffusion with Hampton Research Crystal Screens and pregreased VDX plates. Optimization of Crystal Screen 2 condition #25 yielded ruby-red colored crystals appearing within 3 days at 20 C in 0.01 M CoCl2.6H2O, 0.1 M MES monohydrate pH 6.5 and 2.5 M (NH4)2SO4. The crystallization process yielded crystals containing only CAP protein without DNA, VAPOR DIFFUSION, HANGING DROP, temperature 293K |