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4DGX

LEOPARD Syndrome-Associated SHP2/Y279C mutant

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-BM
Synchrotron siteAPS
Beamline19-BM
Temperature [K]100
Detector technologyCCD
DetectorADSC QUANTUM 210r
Wavelength(s)0.97915
Spacegroup nameP 21 21 2
Unit cell lengths55.140, 225.120, 40.907
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.875 - 2.300
R-factor0.2117
Rwork0.209
R-free0.26620
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008
RMSD bond angle1.115
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareMOLREP
Refinement softwarePHENIX ((phenix.refine: 1.6.4_486))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.340
High resolution limit [Å]2.3002.300
Rmerge0.0810.658
Number of reflections23562
<I/σ(I)>31.071.9
Completeness [%]99.8100
Redundancy7.34.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.329320% PEG3350, 300 mM potassium formate, 10 mM calcium chloride, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K

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PDB entries from 2024-11-20

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