4D7A
Crystal structure of E. coli tRNA N6-threonylcarbamoyladenosine dehydratase, TcdA, in complex with AMP at 1.801 Angstroem resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | CCD |
Detector | ADSC CCD |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 65.690, 97.160, 83.190 |
Unit cell angles | 90.00, 111.61, 90.00 |
Refinement procedure
Resolution | 41.138 - 1.801 |
R-factor | 0.141 |
Rwork | 0.139 |
R-free | 0.17660 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB ENRTY 4D79 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.003 |
Data reduction software | XDS |
Data scaling software | Aimless |
Refinement software | PHENIX ((PHENIX.REFINE: 1.8.4_1496)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.140 | 1.865 |
High resolution limit [Å] | 1.801 | 1.801 |
Rmerge | 0.047 | 0.412 |
Number of reflections | 87129 | |
<I/σ(I)> | 19.93 | 4.05 |
Completeness [%] | 97.1 | 92.68 |
Redundancy | 4 | 4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 |