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4D1M

Tetramerization domain of zebrafish p53 (crystal form II)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Spacegroup nameP 1 21 1
Unit cell lengths70.861, 74.507, 74.945
Unit cell angles90.00, 117.79, 90.00
Refinement procedure
Resolution28.900 - 2.200
R-factor0.22845
Rwork0.226
R-free0.27996
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.011
RMSD bond angle1.336
Refinement softwareREFMAC (5.8.0069)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]28.9002.320
High resolution limit [Å]2.2002.200
Rmerge0.0400.520
Number of reflections34925
<I/σ(I)>14.82.5
Completeness [%]99.399.5
Redundancy3.43.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293SITTING DROP VAPOR DIFFUSION AT 20 DEGREE C; PROTEIN SOLUTION: 12 MG/ML IN 20 MM TRIS PH 7.5, 50 MM NACL, 5 MM DTT; CRYSTALLIZATION BUFFER: 160 MM ZINC ACETATE, 80 MM SODIUM CACODYLATE, PH 6.5, 12% (W/V) POLYETHYLENE GLYCOL 8,000 AND 19% (W/V) GLYCEROL

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PDB entries from 2024-07-10

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