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4D1L

Tetramerization domain of zebrafish p53 (crystal form I)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyCCD
DetectorADSC CCD
Spacegroup nameC 2 2 21
Unit cell lengths87.853, 120.611, 61.029
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution28.500 - 1.970
R-factor0.21876
Rwork0.217
R-free0.24698
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1c26
RMSD bond length0.011
RMSD bond angle1.342
Refinement softwareREFMAC (5.8.0071)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]28.5002.080
High resolution limit [Å]1.9701.970
Rmerge0.0500.650
Number of reflections23226
<I/σ(I)>18.12.8
Completeness [%]99.699.3
Redundancy5.55.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293SITTING DROP VAPOR DIFFUSION AT 20 DEGREE C; PROTEIN SOLUTION: 12 MG/ML IN 20 MM TRIS PH 7.5, 50 MM NACL, 5 MM DTT; CRYSTALLIZATION BUFFER: 50 MM ZINC ACETATE AND 20% (W/V) POLYETHYLENE GLYCOL 3,350.

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PDB entries from 2024-09-11

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