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4ZT6

Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor N-[(4R)-6,8-dichloro-3,4-dihydro-2H-chromen-4-yl]-N'-(5-fluoro-1H-imidazo[4,5-b]pyridin-2-yl)propane-1,3-diamine (Chem 1709)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-2
Synchrotron siteSSRL
BeamlineBL12-2
Temperature [K]100
Detector technologyPIXEL
Collection date2014-06-25
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.954
Spacegroup nameP 21 21 21
Unit cell lengths87.077, 106.229, 206.561
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution37.870 - 2.250
R-factor0.20898
Rwork0.208
R-free0.23348
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4eg8
RMSD bond length0.007
RMSD bond angle1.119
Data reduction softwareXDS
Data scaling softwareAimless (0.3.11)
Phasing softwarePHASER (2.5.6)
Refinement softwareREFMAC (5.8.0073)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]37.8702.290
High resolution limit [Å]2.2502.250
Rmerge0.1161.011
Number of reflections91234
<I/σ(I)>12.61.9
Completeness [%]99.799.7
Redundancy6.76.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2982.0-2.3 M ammonium sulfate, 0.2 M sodium chloride, 0.1 M sodium cacodylate

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PDB entries from 2024-05-15

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