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4ZT4

Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitorN-(3,5-dichlorobenzyl)-2,2-difluoro-N'-(1H-imidazo[4,5-b]pyridin-2-yl)propane-1,3-diamine (Chem 1708)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-2
Synchrotron siteSSRL
BeamlineBL12-2
Temperature [K]100
Detector technologyPIXEL
Collection date2014-06-25
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.954
Spacegroup nameP 21 21 21
Unit cell lengths87.516, 106.128, 207.106
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution38.590 - 2.300
R-factor0.2016
Rwork0.200
R-free0.22510
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4eg8
RMSD bond length0.007
RMSD bond angle1.105
Data reduction softwareXDS
Data scaling softwareAimless (0.3.11)
Phasing softwarePHASER (2.5.6)
Refinement softwareREFMAC (refmac_5.8.0073)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]38.59038.5902.340
High resolution limit [Å]2.30012.1702.300
Rmerge0.0980.0190.995
Rpim0.0410.0080.406
Total number of observations583582416131075
Number of reflections86315
<I/σ(I)>1757.82.2
Completeness [%]99.997.1100
Redundancy6.86.36.9
CC(1/2)0.9991.0000.742
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2982.0-2.3 M ammonium sulfate, 0.2 M sodium chloride, 0.1 M sodium cacodylate

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