4ZMW
Crystal structure of human P-cadherin (enc-X-dimer)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-11-04 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 94.369, 106.810, 77.579 |
Unit cell angles | 90.00, 94.86, 90.00 |
Refinement procedure
Resolution | 47.020 - 2.300 |
R-factor | 0.23277 |
Rwork | 0.230 |
R-free | 0.27558 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zmn |
RMSD bond length | 0.013 |
RMSD bond angle | 1.592 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.020 | 2.420 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.066 | 0.279 |
Number of reflections | 33629 | |
<I/σ(I)> | 15.4 | 4.8 |
Completeness [%] | 98.8 | 92 |
Redundancy | 5 | 4.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 1.15 M Lithium sulfate 7.5 mM nickel sulfate 100 mM TRIS |