4ZMP
Crystal structure of human P-cadherin (ss-dimer Q101L)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-12-16 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 120.700, 77.990, 49.230 |
Unit cell angles | 90.00, 105.78, 90.00 |
Refinement procedure
Resolution | 35.740 - 2.150 |
R-factor | 0.22343 |
Rwork | 0.222 |
R-free | 0.25199 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zmn |
RMSD bond length | 0.018 |
RMSD bond angle | 2.003 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.740 | 2.270 |
High resolution limit [Å] | 2.150 | 2.150 |
Rmerge | 0.085 | 0.490 |
Number of reflections | 22729 | |
<I/σ(I)> | 8.6 | 2.3 |
Completeness [%] | 95.2 | 89.7 |
Redundancy | 3.5 | 3.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 30% PEG 400 150 mM CaCl2 5% glycerol 95 mM HEPES |