4Z36
Crystal Structure of Human Lysophosphatidic Acid Receptor 1 in complex with ONO-3080573
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-11-10 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.033 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 34.350, 111.930, 153.960 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.900 |
R-factor | 0.2728 |
Rwork | 0.272 |
R-free | 0.29210 |
RMSD bond length | 0.009 |
RMSD bond angle | 0.870 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.000 | 3.100 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.130 | 0.590 |
Number of reflections | 12701 | |
<I/σ(I)> | 7.2 | 1.3 |
Completeness [%] | 92.0 | 80 |
Redundancy | 5.4 | 2.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 5.5 | 293 | 0.1 M sodium citrate (pH 5.5), 34 - 38% (v/v) PEG400 and 200 mM ammonium acetate |
1 | LIPIDIC CUBIC PHASE | 5.5 | 293 | 0.1 M sodium citrate (pH 5.5), 34 - 38% (v/v) PEG400 and 200 mM ammonium acetate |