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4YX1

SpaO(SPOA2)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X29A
Synchrotron siteNSLS
BeamlineX29A
Temperature [K]100
Detector technologyCCD
Collection date2013-07-31
DetectorADSC QUANTUM 315r
Wavelength(s)0.979
Spacegroup nameP 1 21 1
Unit cell lengths35.000, 41.270, 48.000
Unit cell angles90.00, 103.92, 90.00
Refinement procedure
Resolution31.262 - 1.350
R-factor0.1747
Rwork0.172
R-free0.20530
Structure solution methodSAD
RMSD bond length0.007
RMSD bond angle1.093
Data scaling softwareAimless (0.2.7)
Phasing softwarePHENIX
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]41.27041.2701.370
High resolution limit [Å]1.3507.3901.350
Rmerge0.1460.1221.281
Rpim0.0590.0540.511
Total number of observations20396784910254
Number of reflections29266
<I/σ(I)>8.615.52.1
Completeness [%]99.776.7100
Redundancy75.67.1
CC(1/2)0.9940.9810.750
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293SpaO(232-297) was concentrated to 8mg/mL and crystallized with 35% PEG400, 200mM calcium acetate, 100mM sodium acetate pH=5.0. Crystals were cryoprotected in the mother liquor. Microseeding was employed to enhance crystal uniformity and diffraction. Briefly, crystals to be seeded were harvested in precipitant solution and vortexed in a microfuge tube with a small stir bar for ~60 seconds. The slurry of microseeds was serially dilluted (5-10-fold steps) in precipitant solution and 5 selected microseed-precipitant mixtures were mixed with fresh protein as in a normal hanging drop experiment.

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