4YV3
Trimeric crystal structure of vimentin coil1B fragment
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-11-14 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97895 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 39.060, 60.950, 48.900 |
Unit cell angles | 90.00, 104.33, 90.00 |
Refinement procedure
Resolution | 47.379 - 2.000 |
R-factor | 0.2568 |
Rwork | 0.255 |
R-free | 0.29620 |
Structure solution method | SAD |
RMSD bond length | 0.004 |
RMSD bond angle | 0.487 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELXDE |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.100 | |
High resolution limit [Å] | 2.000 | 9.000 | 2.000 |
Rmerge | 0.091 | 0.054 | 0.895 |
Rmeas | 0.098 | 0.059 | 0.966 |
Total number of observations | 219408 | ||
Number of reflections | 29510 | 299 | 4024 |
<I/σ(I)> | 11.98 | 27.4 | 2.25 |
Completeness [%] | 99.7 | 91.7 | 99.2 |
Redundancy | 7.4 | 7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 298 | 10mg/ml protein in 10mM Tris-HCl pH 8, 38 mM NaCl mixed in v/v ratio 1:1 with ammonium sulphate 2.2M, sodium thiocyanate 0.2 M |