4YSH
Crystal structure of glycine oxidase from Geobacillus kaustophilus
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
| Synchrotron site | Photon Factory |
| Beamline | AR-NE3A |
| Temperature [K] | 95 |
| Detector technology | CCD |
| Collection date | 2014-02-01 |
| Detector | ADSC QUANTUM 270 |
| Wavelength(s) | 1.000 |
| Spacegroup name | P 65 2 2 |
| Unit cell lengths | 87.945, 87.945, 413.456 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 50.000 - 2.200 |
| R-factor | 0.2345 |
| Rwork | 0.233 |
| R-free | 0.26610 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | PDB 1RYI |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.344 |
| Data reduction software | HKL-2000 |
| Data scaling software | HKL-2000 |
| Phasing software | MOLREP (10.2.35) |
| Refinement software | REFMAC (5.5.0109) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.000 | 50.000 | 2.280 |
| High resolution limit [Å] | 2.200 | 4.740 | 2.200 |
| Rmerge | 0.096 | 0.064 | 0.417 |
| Rmeas | 0.098 | 0.066 | 0.426 |
| Rpim | 0.022 | 0.016 | 0.089 |
| Total number of observations | 1006443 | ||
| Number of reflections | 48899 | ||
| <I/σ(I)> | 11.5 | 10.5 | |
| Completeness [%] | 98.6 | 90.2 | 99.7 |
| Redundancy | 20.6 | 15.9 | 22.2 |
| CC(1/2) | 0.997 | 0.972 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 4.7 | 298 | 0.1 M phosphate-citrate buffer, 7% 2-propanol, 0.4 M LiSO4 |
